Reproduce iDEP analyses with auto-generated R Markdown

iDEP is a tool for interactive analysis of RNA-Seq data. After analyzing their data, users have the option to download a R Markdown file, toegether with other data files, to reproduce the entire workflow. This blog is both the easiest and the hardest of all. It is easy because everything below was automatically generated by iDEP; it is hard as I have to write code to write code when developing iDEP.